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Peer Review and Manuscript Management in Scientific Journals
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Table of Contents

Foreword by Robert Campbell and Sally Morris ix

Preface xi

Chapter 1: Introduction 1

What should peer review do? 2

What does peer review assume? 4

What is this book trying to achieve? 4

Chapter 2: The peer-review process – how to get going 9

The basic process 9

The people involved in running the peer-review process 10

Office organization 11

Choice of system and procedures 14

Record keeping 16

Systems available 20

Chapter 3: Manuscript submission and initial checks on completeness and suitability 25

Submission guidance to authors 26

Journal scope and editorial policy 26

Manuscript presentation 28

Manuscript submission 31

Checking and logging of submitted manuscripts 32

Transfer to editor 34

Initial assessment of suitability and rejection without external review 36

Manuscripts with language problems 38

Chapter 4: The full review process 41

Identifying and selecting appropriate reviewers 43

Reviewer information 44

How to go about identifying and selecting reviewers 48

Finding reviewers 53

To invite or not? 53

Inviting reviewers 54

Responses to invitations to review 56

Getting the manuscript and associated material to the reviewers 60

Information reviewers will require 61

Associated material needed by reviewers 63

Monitoring review progress 66

Reminding and chasing reviewers 67

Problems during review 70

Reviewers not returning reviews 71

Receiving and checking of returned reviews 73

Checking of reviews 74

The ethics of amending reviewer reports for authors 77

The ‘ideal’ report 78

Back-to-back manuscripts 82

Dealing with enquiries on manuscript status 84

Chapter 5: The decision-making process for reviewed manuscripts 87

The organizational structure for decision making 87

The decision-making process 89

Divided opinions from reviewers 91

The decisions that can be made 94

Checks to be made before communicating decisions to authors 99

Communicating the decision to the authors 102

Rebuttals and appeals from authors 103

Dealing with revisions 104

Dealing with resubmissions 107

Problems with resubmissions 109

Acceptance 110

Decision making to consistent standards and the problem of availability of space 112

Special considerations in decision making: dual-use research and the possible misuse of information 114

Chapter 6: Moving to online submission and review 119

How do you choose an online system? 120

How to prepare to move to online working 122

Evaluation of current workflow and responsibilities 123

Specification design for the journal 125

Questions and text options on the site 125

Preparation of editorial correspondence for the online site 126

Health and safety issues 127

Training and support 128

Data transfer 130

The launch and transition period 130

What to expect after going live online 132

Impact on submission numbers 132

Impact on the quality of submissions 132

Impact on geographical origin of submissions 132

Impact on reviewing and administration times 133

Problems that may be encountered and how to deal with them 133

Online systems are never closed 133

Users will grumble 133

Users needing extra support 133

Editors not using the online system properly 134

The need to work ‘offline’ occasionally 134

Users not using the online system to communicate or not mounting all relevant information 134

Responses from reviewers 135

Reviews submitted for the wrong manuscript or comments in the wrong place, and editors submitting the wrong documents or working on the wrong manuscript screen 135

Other editors or people not associated with a manuscript needing to see material 135

Submissions from the editor-in-chief 136

Reviewers requesting hard copy and/or refusing to work online 136

Users adding other people’s email addresses to their own accounts 137

A final note 137

Chapter 7: Reviewers – a precious resource 139

Thanks and feedback to reviewers 139

Reviewer training 140

Ways to recompense reviewers 142

How to develop and maintain reviewer loyalty 143

Recognition of peer review as an accredited professional activity 144

Chapter 8: The obligations and responsibilities of the people involved in peer review 147

Authors – their obligations and responsibilities 148

To act honestly 148

To choose the most appropriate journal 149

To make sure manuscripts are well presented, contain nothing inappropriate and are submitted correctly 149

To deal appropriately with all authorship issues 151

Editors – their obligations and responsibilities 158

General responsibilities 158

Responsibilities to authors 159

Responsibilities to reviewers 160

Responsibilities to readers 161

Reviewers – their obligations and responsibilities 162

Editorial office staff – their obligations and responsibilities 164

Conflicts of interest – what they are and how to deal with them 164

What are conflicts of interest? 164

How should conflicts of interest be handled? 167

Moral dilemmas 169

Political or human rights issues 169

Authors accused of criminal offences 170

Refusals by publishers to publish articles 170

Inability to complete review of a manuscript 170

Chapter 9: Misconduct in scientific research and publishing – what it is and how to deal with it 173

What types of misconduct can occur? 174

Author misconduct 174

Reviewer misconduct 182

Editor misconduct 183

How should cases of alleged or suspected misconduct be handled? 184

Where can you turn for help? 187

The publisher 188

Professional bodies 188

Scholarly publishing organizations 188

The Committee on Publication Ethics (COPE) 188

The Office of Research Integrity (ORI) 189

International Committees for Scientific Misconduct 189

Funding agencies 190

What sanctions can be imposed as a penalty for misconduct? 190

Authors found guilty of misconduct 190

Reviewers found guilty of misconduct 192

Editors found guilty of misconduct 192

Correcting the literature 192

Notification of an error 193

Expression of concern 194

Retraction of an article 194

Removal of an article 196

Replacement of an article 196

Dubious or fraudulent data remaining in the literature 197

The future 197

Appendices

Appendix I The Golden Rules and the Peer-Review Good Practice Checklist 201

Appendix II Examples of checklists, forms, guidance for reviewers and editorial letters 213

Appendix III Useful websites 269

Appendix IV Alternative models of peer review 275

Index 283

About the Author

Irene Hames moved from cell biology research into scientific publishing and worked for many years on scholarly journals. She was the founding managing editor of a large international science journal for 20 years, running the editorial office and managing the peer-review process. She now works as an independent editorial consultant. She is frequently called upon to give talks and advise on editorial issues and has been a member of a number of working parties on peer review.

Reviews

"…a godsend to the rookie editor taking the driving seat for the first time and feeling understandably daunted by the responsibility. Statements like 'no editorial office should be without it', 'an essential resource' or 'indispensable' unfortunately sound like clichés. In the case of this book, however, they are all true. In fact, I think I will need a second copy for when one of my colleagues pinches this one!"   (Learned Publishing). “By writing a book on peer review and manuscript management, Irene Hames has helped millions of readers, thousands of authors and hundreds of reviewers and editors to reach a higher standard for scientific publications. I benefited greatly reading the book and warmly suggest every scientist to have it available as a reference book on his or her book shelf when thinking about putting together a manuscript or when invited to serve the community as a reviewer.” (Journal of Sedimentary Research) "Hames’ aim is to provide a manual to help editors, their editorial colleagues, and staff, and to give practical guidance on all aspects of peer review, creating an awareness of the issues involved and potential problems. This she has achieved, taking the reader from manuscript submission, through the peer review process, to decision making… [Included are] some 80 pages of appendices. These extremely useful checklists, forms, guidance, and sample letters provide salient information, and act as an excellent resource for all involved in the publication of scientific journals. Hames offers essential instruction for editors at all levels. Reviewers, even authors, would profit from reading this book. But it will be of most use to those starting a new position in the publication of scientific journals; from academic Editor-in-Chief to Editorial Assistant, it should be prerequisite reading." (The Lancet) "… this comprehensive, authoritative, and useful book represents a precious resource for would-be editors wishing to learn every aspect of manuscript management and peer review. Established journals wishing to review and update administrative practices, and even authors and peer reviewers may find it helpful and informative on many aspects of the work performed in editorial offices, which often is shrouded in mystery." (Journal of the American Medical Association) "...a timely and well-informed book. Newly appointed editors will find masses of useful information and practical tips. Seasoned editors will be inspired to reassess and refine their own procedures." (Polar Research)
“An excellent and must-read book for journal editors … It will also serve as a valuable resource for anyone interested or involved in the peer-review process.” (PsycCritiques) "Irene Hames....writes engagingly, and, from the viewpoint of her extensive experience, provides a practical handbook that describes ways of coping with the many day-to-day problems that must be faced by the editor and office staff of a scientific journal...I strongly recommend it..." (Editing Matters)

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